ij.plugin.filter
Class Calibrator

java.lang.Object
  ij.plugin.filter.Calibrator

All Implemented Interfaces:

ij.measure.Measurements, PlugInFilter, java.awt.event.ActionListener, java.util.EventListener

public class Calibrator
extends java.lang.Object
implements PlugInFilter, ij.measure.Measurements, java.awt.event.ActionListener

Implements the Analyze/Calibrate command.

Field Summary

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Fields inherited from interface ij.measure.Measurements

AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SKEWNESS, SLICE, STD_DEV

Constructor Summary

Calibrator()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e)
void	calibrate(ImagePlus imp)
(package private) double[]	doCurveFitting(double[] x, double[] y, int fitType)
(package private) void	drawLabel(ij.gui.PlotWindow pw, java.lang.String label)
(package private) double[]	getData(java.lang.String xData)
(package private) java.lang.String[]	getFunctionList(boolean custom)
(package private) java.lang.String	getMeans()
(package private) double	getNum(java.util.StringTokenizer st)
(package private) java.awt.Panel	makeButtonPanel(ij.gui.GenericDialog gd) Creates a panel containing "Save..." and "Save..." buttons.
(package private) void	open()
void	run(ImageProcessor ip) Filters use this method to process the image.
(package private) void	save()
int	setup(java.lang.String arg, ImagePlus imp) This method is called once when the filter is loaded.
boolean	showDialog(ImagePlus imp)
(package private) void	showPlot(double[] x, double[] y, ij.measure.Calibration cal, java.lang.String rSquared)
(package private) double	sqr(double x)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Calibrator

public Calibrator()

Method Detail

setup

public int setup(java.lang.String arg,
                 ImagePlus imp)

Description copied from interface: PlugInFilter

This method is called once when the filter is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt or in the plugins.config file of a jar archive containing the plugin. 'imp' is the currently active image. This method should return a flag word that specifies the filters capabilities.

For Plugin-filters specifying the FINAL_PROCESSING flag, the setup method will be called again, this time with arg = "final" after all other processing is done.

Specified by:

setup in interface PlugInFilter

run

public void run(ImageProcessor ip)

Description copied from interface: PlugInFilter

Filters use this method to process the image. If the SUPPORTS_STACKS flag was set, it is called for each slice in a stack. With CONVERT_TO_FLOAT, the filter is called with the image data converted to a FloatProcessor (3 times per image for RGB images). ImageJ will lock the image before calling this method and unlock it when the filter is finished. For PlugInFilters specifying the NO_IMAGE_REQUIRED flag and not the DONE flag, run(ip) is called once with the argument null.

Specified by:

run in interface PlugInFilter

showDialog

public boolean showDialog(ImagePlus imp)

makeButtonPanel

java.awt.Panel makeButtonPanel(ij.gui.GenericDialog gd)

Creates a panel containing "Save..." and "Save..." buttons.

calibrate

public void calibrate(ImagePlus imp)

doCurveFitting

double[] doCurveFitting(double[] x,
                        double[] y,
                        int fitType)

showPlot

void showPlot(double[] x,
              double[] y,
              ij.measure.Calibration cal,
              java.lang.String rSquared)

drawLabel

void drawLabel(ij.gui.PlotWindow pw,
               java.lang.String label)

sqr

double sqr(double x)

getFunctionList

java.lang.String[] getFunctionList(boolean custom)

getMeans

java.lang.String getMeans()

getData

double[] getData(java.lang.String xData)

getNum

double getNum(java.util.StringTokenizer st)

save

void save()

open

void open()

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener