ij.plugin
Class Selection

java.lang.Object
  ij.plugin.Selection

All Implemented Interfaces:

ij.measure.Measurements, PlugIn

public class Selection
extends java.lang.Object
implements PlugIn, ij.measure.Measurements

This plugin implements the commands in the Edit/Section submenu.

Field Summary

(package private) static java.lang.String	angle
(package private) static java.lang.String	bandSize
(package private) static java.lang.String	enlarge
(package private) ImagePlus	imp
(package private) float[]	kernel
(package private) float[]	kernel3

Fields inherited from interface ij.measure.Measurements

AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SKEWNESS, SLICE, STD_DEV

Constructor Summary

Selection()

Method Summary

(package private) void	addToRoiManager(ImagePlus imp)
(package private) void	convexHull(ImagePlus imp)
(package private) void	createMask(ImagePlus imp)
(package private) void	createMaskFromThreshold(ImagePlus imp)
(package private) void	createSelectionFromMask(ImagePlus imp)
(package private) void	drawEllipse(ImagePlus imp)
(package private) int	findFirstPoint(int[] xCoordinates, int[] yCoordinates, int n, ImagePlus imp)
(package private) void	fitSpline()
(package private) float[]	getCurvature(int[] x, int[] y, int n)
(package private) double	getLength(ij.gui.PolygonRoi roi)
(package private) void	invert(ImagePlus imp)
(package private) ij.gui.Roi	makeConvexHull(ImagePlus imp, ij.gui.PolygonRoi roi)
(package private) double	rodbard(double x)
void	run(java.lang.String arg) This method is called when the plugin is loaded.
(package private) void	runMacro(java.lang.String arg)
(package private) ij.gui.PolygonRoi	trimPolygon(ij.gui.PolygonRoi roi, double length)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

imp

ImagePlus imp

kernel

float[] kernel

kernel3

float[] kernel3

angle

static java.lang.String angle

enlarge

static java.lang.String enlarge

bandSize

static java.lang.String bandSize

Constructor Detail

Selection

public Selection()

Method Detail

run

public void run(java.lang.String arg)

Description copied from interface: PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface PlugIn

runMacro

void runMacro(java.lang.String arg)

fitSpline

void fitSpline()

getLength

double getLength(ij.gui.PolygonRoi roi)

trimPolygon

ij.gui.PolygonRoi trimPolygon(ij.gui.PolygonRoi roi,
                              double length)

rodbard

double rodbard(double x)

getCurvature

float[] getCurvature(int[] x,
                     int[] y,
                     int n)

drawEllipse

void drawEllipse(ImagePlus imp)

convexHull

void convexHull(ImagePlus imp)

makeConvexHull

ij.gui.Roi makeConvexHull(ImagePlus imp,
                          ij.gui.PolygonRoi roi)

findFirstPoint

int findFirstPoint(int[] xCoordinates,
                   int[] yCoordinates,
                   int n,
                   ImagePlus imp)

createMask

void createMask(ImagePlus imp)

createMaskFromThreshold

void createMaskFromThreshold(ImagePlus imp)

createSelectionFromMask

void createSelectionFromMask(ImagePlus imp)

invert

void invert(ImagePlus imp)

addToRoiManager

void addToRoiManager(ImagePlus imp)