ij.plugin
Class Slicer

java.lang.Object
  ij.plugin.Slicer

All Implemented Interfaces:

PlugIn, java.awt.event.ItemListener, java.awt.event.TextListener, java.util.EventListener

public class Slicer
extends java.lang.Object
implements PlugIn, java.awt.event.TextListener, java.awt.event.ItemListener

Implements the Image/Stacks/Reslice command. Known shortcomings: for FREELINE or POLYLINE ROI, spatial calibration is ignored: the image is sampled at constant _pixel_ increments (distance 1), so (if y/x aspect ratio != 1 in source image) one dimension in the output is not homogeneous (i.e. pixelWidth not the same everywhere).

Constructor Summary

Slicer()

Method Summary

(package private) ImageStack	createOutputStack(ImagePlus imp, ImageProcessor ip)
(package private) void	doIrregularSetup(ij.gui.Roi roi)
(package private) void	drawLine(double x1, double y1, double x2, double y2, ImagePlus imp)
(package private) int	getAvailableMemory()
(package private) float[]	getIrregularProfile(ij.gui.Roi roi, ImageProcessor ip)
(package private) int	getOutputStackSize(double inSpacing, double outSpacing, int count)
(package private) java.lang.String	getSize(double inSpacing, double outSpacing, int count)
(package private) ImageProcessor	getSlice(ImagePlus imp, double x1, double y1, double x2, double y2, java.lang.String status)
void	itemStateChanged(java.awt.event.ItemEvent e)
(package private) void	makePolygon(int count, double outSpacing)
void	putColumn(ImageProcessor ip, int x, int y, float[] data, int length)
void	putRow(ImageProcessor ip, int x, int y, float[] data, int length)
ImagePlus	reslice(ImagePlus imp)
(package private) ImagePlus	resliceRectOrLine(ImagePlus imp)
void	run(java.lang.String arg) This method is called when the plugin is loaded.
(package private) void	saveLineInfo(ij.gui.Roi roi)
(package private) boolean	showDialog(ImagePlus imp)
void	textValueChanged(java.awt.event.TextEvent e)
(package private) void	updateSize()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Slicer

public Slicer()

Method Detail

run

public void run(java.lang.String arg)

Description copied from interface: PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface PlugIn

reslice

public ImagePlus reslice(ImagePlus imp)

showDialog

boolean showDialog(ImagePlus imp)

saveLineInfo

void saveLineInfo(ij.gui.Roi roi)

resliceRectOrLine

ImagePlus resliceRectOrLine(ImagePlus imp)

createOutputStack

ImageStack createOutputStack(ImagePlus imp,
                             ImageProcessor ip)

getSlice

ImageProcessor getSlice(ImagePlus imp,
                        double x1,
                        double y1,
                        double x2,
                        double y2,
                        java.lang.String status)

putRow

public void putRow(ImageProcessor ip,
                   int x,
                   int y,
                   float[] data,
                   int length)

putColumn

public void putColumn(ImageProcessor ip,
                      int x,
                      int y,
                      float[] data,
                      int length)

getIrregularProfile

float[] getIrregularProfile(ij.gui.Roi roi,
                            ImageProcessor ip)

doIrregularSetup

void doIrregularSetup(ij.gui.Roi roi)

drawLine

void drawLine(double x1,
              double y1,
              double x2,
              double y2,
              ImagePlus imp)

textValueChanged

public void textValueChanged(java.awt.event.TextEvent e)

Specified by:

textValueChanged in interface java.awt.event.TextListener

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent e)

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

updateSize

void updateSize()

getSize

java.lang.String getSize(double inSpacing,
                         double outSpacing,
                         int count)

makePolygon

void makePolygon(int count,
                 double outSpacing)

getOutputStackSize

int getOutputStackSize(double inSpacing,
                       double outSpacing,
                       int count)

getAvailableMemory

int getAvailableMemory()